Whole Reaction
The ambiguous reaction-related words, such as “catalysis”, “activity”, “reaction”, “action” and “mechanism”, which do not describe any detailed reaction steps, can be annotated as trigger words in this reaction event category. For this reaction event, Agent tends to be Enzyme rather than Functional group or Other compound (example 9).
Typical triggers of this reaction event are as follows:
- Catalysis
- Catalytic mechanism
- Hydrolysis
- Its activity
- pre-steady-state reactions
- One of first catalytic steps
- This reaction
- This reaction catalysed
- Two distinct steps
- acting as
- action
- activities
- activity
- accumulation
- all activity
- alternative function
- autocatalytic processing
- biocatalyst
- biochemical mechanism
- biosynthesis
- both hydrolytic processes
- both mechanisms
- both of chemical steps
- both reaction paths
- both steps
- catalyses production
- catalyses rate-limiting step
- catalysis
- catalysis of bimolecular reactions
- catalytic
- catalytic activity
- catalytic cycle
- catalytic diversity
- catalytic efficiency
- catalytic function
- catalytic functions
- catalytic machinery
- catalytic mechanism
- catalytic mechanisms
- catalytic reaction
- catalytically-involved
- catalyze analogous reactions
- chemical mechanism
- chemical step
- common catalyzed mechanisms
- complete mechanism
- efficient catalysis
- entropic mechanism for catalytic turnover
- enzymatic activity
- enzymatic function
- enzymatic reaction
- enzymatic reaction catalyzed
- enzymatic significance
- enzyme activity
- mechanism
- mechanism of action
- mechanistic
- mechanistic consequences
- Reaction mechanism
- This mechanism
- Two possible mechanisms
- enzyme mechanism
- enzymic mechanism
- enzymological properties
- mechanism
- mechanism of action
- mechanism of catalysis
- its mechanism
- mechanism-based
- mechanisms
- mechanistic
- mechanistic basis
- mechanistic steps
- metabolizes
- Electrostatic guidance
- GA/GB mechanism
- minimum kinetic mechanism
- high catalytic efficiency
- high catalytic power
- molecular mechanism
- molecular mechanisms
- ordered kinetic mechanism
- ordered reaction mechanism
- overall catalytic activity
- overall mechanism
- precise mechanism
- new mechanism
- same chemical mechanism for catalysis
- same general catalytic mechanism
- substrate-assisted catalysis
- substrate-assisted catalysis mechanism
- three-metal mechanism
- two metal ion mechanism
- two-metal-ion mechanism
- two-step mechanism
- two models
- these gas-phase reactions
- this bimolecular reaction
- unimolecular reactions
- turnover
- uncatalyzed reaction
- noncatalyzed
- noncatalyzed reaction
- nonenzymatic processes
- various genetic processes
- series of reactions
- significant activity
- similar catalytic mechanism
- full enzymatic activity
- structural mechanism
- solution reaction
- specific activity
- step
- steps
- rate-determining step
- this step
- first committed step
- first step
- single reaction step
- second step of catalysis
- react
- reaction
- reaction catalyzed
- reaction mechanism
- reaction mechanism o
- reaction pathway
- reactions
- reactions catalyzed
- this reaction
- reactivity
- operate
- normal function
- unusually high activity
- utilize
Non-specific catalytic roles described in the following are also categorized into this reaction event.
- catalytic role(s)
- function
- functional properties
- functional role(s)
- important but non-essential role
- important role in catalysis
- its role in catalysis
- their role
- major roles
- minor roles
- play(s) role
- plays important role
- primary role
- role
- roles
- role in catalysis
- Roles in catalysis
- dual functionality
- dual role
- three elements
The events which “form” some compounds are also categorized in this reaction event:
- form
- formed
- forms
- formation
- transient formation
- generate
- generated
- generates
- generating
- produced
- production
- provide
- lead to
- resulting
- (whose action) produces
- yielding
- yields
More specific types of whole reactions, such as hydrolysis, transfer
and isomerization, are also categorized in this reaction event,
WholeReaction, as follows:
- addition
- alkylation
- ability to convert
- ability to process
- acetylation (reaction)
- catalytic hydrolysis
- catalyze alkylation
- catalyze buffering
- catalyze conversion
- catalyze dephosphorylation
- catalyze hydrolysis
- catalyze their reactions
- catalyze transfers
- catalyses transfer
- catalyzed hydrolysis
- catalyzed reaction
- catalyzed tritium exchange
- catalyzes addition
- catalyzes formation
- catalyzes hydrolysis
- catalyzes irreversible conversion
- catalyzes posttranscriptional transglycosylation reaction
- catalyzes reversible interconversion
- catalyzes transfer
- catalyzing transfer
- Transglycosylation
- condensation mechanism
- conversion
- converts
- copied
- damaged
- deglycosylation step
- dephosphorylate
- dephosphorylation step
- direct hydrolysis
- dissociative
- double-displacement mechanism
- elimination reaction
- enolization step
- enzymatic hydrolysis
- glycosylation step
- highly dissociative
- hydration catalyzed
- hydride transfer
- hydrolysis
- hydrolysis catalyzed
- hydrolysis event
- hydrolysis mechanism
- hydrolytic activity
- hydrolytic reaction
- hydrolytic reaction mechanism
- hydrolyze
- hydrolyzed
- hydrolyzes
- hydrolyzing
- initial ketonization
- interconversion
- interconversions
- isomerase activity
- isomerization
- ketonisation
- mechanism of hydrolysis
- mechanism retaining anomeric configuration at cleavage point
- modification to retroaldol mechanism
- modified
- modifies
- nonenzymatic hydrolysis
- oxidation
- phosphorylate
- phosphorylation step
- processing
- proteolytic activities
- rearrangement
- reduction
- regenerating
- repair
- retroaldol mechanism
- reversible acetylation
- same retroaldol mechanism
- side reaction converting
- separating
- subsequent hydrolysis step
- subsequent transfer
- suicidal side reaction that converts
- supplies
- synthesis
- synthesize
- synthesize de novo
- synthesized
- this double-displacement reaction
- this enzymatic reaction
- this isomerization
- transaminase reaction
- transfer
- transfer catalyzing
- transfer reaction
- transferred
- transferring
- transglycosylation
- translocation
- two-step double-displacement mechanism
- unknots
- untangles
Occasionally, the reactions are indicated by demonstrative/relative pronouns as follows:
- former event
- latter
- that
- this
- those
- which
This reaction event involves arguments, such as Agent, Theme, Initial Point, and End Point.
The Agent tends to be Enzyme, Amino Acid, and Cofactor, although occasionally Functional Group, Other Compound, and Entity Property can be Agent.
The Theme tends to be Other Compound, their Functional Group and Entity Property, whose attributes are Reaction State, although occasionally Cofactor, Enzyme, and Amino Acid, can be Theme.
In some cases, this reaction event may involve Initial Point, and End Point. The Initial Point tends to be Other Compound, Amino Acid, Cofactor and their Functional Group. The End Point tends to be Other Compound, Amino Acid, Cofactor and their Functional Group, as well as Entity Property.